With the explosion in the amount of DNA and protein sequence available, many organizations offer web-based access to programs which process this information in some way. This category entails the many different services that are open for use by private or public organizations for the purpose of biological computation or services (i.e. informative bioinformatics databases).
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Subcategories 8
Related categories 1
Sites 25
An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also available as a downloadable program.
The focus of the GBF project "Molecular Bioinformatics of Gene Regulation" are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulatory DNA sequences and protein factors binding to and acting through them.
Database of genetic and physical interactions. It contains interaction data from many sources, including several genome/proteome-wide studies, the MIPS database, and BIND.
Resource for storing, searching and retrieving published mathematical models of biological interests. Models present in BioModels Database are annotated and linked to relevant data resources, such as publications, databases of compounds and pathways, controlled vocabularies, etc.
Tools and methods for computational biology. Working on secondary protein structure prediction, providing reliable profiles, and developing new ways to study molecular biology through bioinformatics.
Resources developed for the analysis of increasingly large genome-related datasets. These are openly available to the scientific community.
A free software tool for analysing the hypothetical secondary structure of a family of homologous RNA.
Offers more than 30 online services for DNA and protein bioinformatics analysis.
User guides and worked examples for software applications in structural and molecular biology - from Yale Univ.
Provides an internet service that calculates the site, geometry and energy of small molecules interacting with proteins.
This platform provides over 100 methods for the analysis and visualization of gene expression, copy number, proteomic and other data. It enables biologists to add new analyses and create workflows that can be shared, edited and published.
Online version of the program for populational genetics.
Provides proteomics software tools and databases including SWISS-PROT, PROSITE, SWISS-2DPAGE and Melanie. They also offer a secure version of ExPASy molecular biology web server.
Provides a complete set of bioinformatics tools and public databanks updated daily, and a range of links to seminars, training courses and platform news.
Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) servers, Blast server for parasite genomes (EBI), US (NCBI) servers, Protein structure prediction, PredictProtein Server in Heidelberg, Gene identification, splice sites, exons, introns and a list of gene structure prediction programs
A suite of online tools for analysis of DNA/RNA, proteins and arrays.
LGICdb is a curated repository of genes coding for subunits of Ligand-Gated Ion Channels.
MGRC provides contract genomes services, sequencing services, data and access services.
Framework and web portal specifically designed for the integration of bioinformatics software and databanks. Provides a tutorial and an interactive guided tour.
Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction from the Institute for Transcriptional Informatics.
Performs single-coverage local multiple DNA sequence alignments of finished and draft-quality genome sequences. It also provides with an option to predict transcription factor binding sites evolutionarily conserved across multiple species.
Text and similarity searching, provided by the National Center for Biotechnology Information.
An online service for periodically performing predefined searches at NCBI, reporting new results by email or on the web.
Open web platform for modeling and reverse engineering of photosynthetic dynamism.
Scans sequences for potential transcription factor binding sites using JASPAR and TRANSFAC.
An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also available as a downloadable program.
Scans sequences for potential transcription factor binding sites using JASPAR and TRANSFAC.
This platform provides over 100 methods for the analysis and visualization of gene expression, copy number, proteomic and other data. It enables biologists to add new analyses and create workflows that can be shared, edited and published.
Resource for storing, searching and retrieving published mathematical models of biological interests. Models present in BioModels Database are annotated and linked to relevant data resources, such as publications, databases of compounds and pathways, controlled vocabularies, etc.
LGICdb is a curated repository of genes coding for subunits of Ligand-Gated Ion Channels.
Text and similarity searching, provided by the National Center for Biotechnology Information.
Resources developed for the analysis of increasingly large genome-related datasets. These are openly available to the scientific community.
Provides proteomics software tools and databases including SWISS-PROT, PROSITE, SWISS-2DPAGE and Melanie. They also offer a secure version of ExPASy molecular biology web server.
Tools and methods for computational biology. Working on secondary protein structure prediction, providing reliable profiles, and developing new ways to study molecular biology through bioinformatics.
A suite of online tools for analysis of DNA/RNA, proteins and arrays.
MGRC provides contract genomes services, sequencing services, data and access services.
Online version of the program for populational genetics.
Provides an internet service that calculates the site, geometry and energy of small molecules interacting with proteins.
Framework and web portal specifically designed for the integration of bioinformatics software and databanks. Provides a tutorial and an interactive guided tour.
Provides a complete set of bioinformatics tools and public databanks updated daily, and a range of links to seminars, training courses and platform news.
Performs single-coverage local multiple DNA sequence alignments of finished and draft-quality genome sequences. It also provides with an option to predict transcription factor binding sites evolutionarily conserved across multiple species.
An online service for periodically performing predefined searches at NCBI, reporting new results by email or on the web.
Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) servers, Blast server for parasite genomes (EBI), US (NCBI) servers, Protein structure prediction, PredictProtein Server in Heidelberg, Gene identification, splice sites, exons, introns and a list of gene structure prediction programs
Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction from the Institute for Transcriptional Informatics.
User guides and worked examples for software applications in structural and molecular biology - from Yale Univ.
Offers more than 30 online services for DNA and protein bioinformatics analysis.
The focus of the GBF project "Molecular Bioinformatics of Gene Regulation" are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulatory DNA sequences and protein factors binding to and acting through them.
Database of genetic and physical interactions. It contains interaction data from many sources, including several genome/proteome-wide studies, the MIPS database, and BIND.
Open web platform for modeling and reverse engineering of photosynthetic dynamism.
A free software tool for analysing the hypothetical secondary structure of a family of homologous RNA.
